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Sample GSM2612112 Query DataSets for GSM2612112
Status Public on May 12, 2017
Title whole_blood_control_17
Sample type RNA
 
Source name whole_blood_control
Organism Homo sapiens
Characteristics subject group: CNTL; healthy control
anxiety: no
gender: F
age: 35.7
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 17
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.70159092
1557055_s_at 6.036559781
227201_at 4.951770434
231942_at 3.637533274
235497_at 4.654612718
236624_at 4.193246324
237011_at 4.106595523
1555979_at 5.875352679
1555980_a_at 3.674694374
1560477_a_at 5.38090769
1559139_at 2.946708786
202115_s_at 7.152299054
1555650_at 4.842001956
229792_at 6.157876064
224125_at 6.330157266
224501_at 4.822701818
227347_x_at 4.931665486
205483_s_at 8.063342188
212283_at 4.978975016
212285_s_at 6.40103557

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612112_GP1531_17C_76_SS124110_HG-U133_Plus_2_HCHP-91604_.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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