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Sample GSM2612111 Query DataSets for GSM2612111
Status Public on May 12, 2017
Title whole_blood_control_16
Sample type RNA
 
Source name whole_blood_control
Organism Homo sapiens
Characteristics subject group: CNTL; healthy control
anxiety: no
gender: F
age: 44.1
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 16
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 3.968529277
1557055_s_at 6.802643496
227201_at 5.012683016
231942_at 4.585778941
235497_at 4.310025651
236624_at 4.872841269
237011_at 4.332390436
1555979_at 6.435964752
1555980_a_at 5.600838084
1560477_a_at 6.718846929
1559139_at 3.868758366
202115_s_at 7.67875035
1555650_at 5.343799795
229792_at 5.692424965
224125_at 6.974782973
224501_at 6.071891198
227347_x_at 5.393026087
205483_s_at 9.364263623
212283_at 6.231022263
212285_s_at 6.850194153

Total number of rows: 54675

Table truncated, full table size 1211 Kbytes.




Supplementary file Size Download File type/resource
GSM2612111_GP1531_16C_60_SS124108_HG-U133_Plus_2_HCHP-90332_.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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