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Sample GSM2612108 Query DataSets for GSM2612108
Status Public on May 12, 2017
Title whole_blood_control_13
Sample type RNA
 
Source name whole_blood_control
Organism Homo sapiens
Characteristics subject group: CNTL; healthy control
anxiety: no
gender: M
age: 66.4
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 13
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 4.599412969
1557055_s_at 6.18034531
227201_at 4.617498564
231942_at 3.237235663
235497_at 4.489049218
236624_at 4.399836787
237011_at 3.846441882
1555979_at 5.922919434
1555980_a_at 4.881725557
1560477_a_at 6.596200598
1559139_at 3.382466451
202115_s_at 7.604103096
1555650_at 4.625851521
229792_at 6.88117455
224125_at 6.859348149
224501_at 5.529452276
227347_x_at 5.125463967
205483_s_at 9.089934496
212283_at 5.120577367
212285_s_at 6.842158511

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612108_GP1531_13C_19_SS124102_HG-U133_Plus_2_HCHP-87379_.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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