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Sample GSM2612103 Query DataSets for GSM2612103
Status Public on May 12, 2017
Title whole_blood_control_8
Sample type RNA
 
Source name whole_blood_control
Organism Homo sapiens
Characteristics subject group: CNTL; healthy control
anxiety: no
gender: F
age: 64.5
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 8
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 4.081394066
1557055_s_at 6.839213649
227201_at 4.273714898
231942_at 4.273452763
235497_at 3.752911392
236624_at 4.290700618
237011_at 3.573286667
1555979_at 6.359830239
1555980_a_at 5.518133065
1560477_a_at 6.548048075
1559139_at 3.03324487
202115_s_at 7.787652598
1555650_at 5.318020883
229792_at 6.392947517
224125_at 6.744281602
224501_at 5.296175728
227347_x_at 5.872557516
205483_s_at 7.657375229
212283_at 5.728364536
212285_s_at 6.355857727

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612103_GP1531_08C_67_SS124094_HG-U133_Plus_2_HCHP-90339_.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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