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Sample GSM2561521 Query DataSets for GSM2561521
Status Public on Apr 01, 2019
Title Young1
Sample type RNA
Source name Young_mice
Organism Mus musculus
Characteristics age: 13 weeks
gender: male
tissue: skeletal muscle
Extracted molecule total RNA
Extraction protocol RNA was isolated from the gastrocnemius skeletal muscle of young mice and old mice. RNA was purified using the RNeasy Mini kit (Qiagen, Hilden, Germany).
Label Cy3
Label protocol Cy3-labeled cRNA (1.65 μg) was mixed and fragmented according to the Agilent Technologies protocol.
Hybridization protocol cRNA was prepared according to the standard Agilent protocol. Agilent platform Agilent-028005 SurePrint G3 Mouse GE 8x60K Microarray (Feature Number version) was used.
Scan protocol Arrays were scanned on an Agilent Microarray Scanner to detect Cy3 fluorescence.
Data processing The scanned images were analyzed using Feature Extraction Software 9.5 (Agilent) with default parameters (protocol: GE1_1100_Jul11 and Grid: 028005_D_F_20150604 to obtain background-subtracted and spatially detrended Processed Signal intensities. Features flagged in Feature Extraction Software as Non-uniform outliers were excluded.
Submission date Apr 02, 2017
Last update date Apr 01, 2019
Contact name Yukino Hatazawa
Organization name Kyoto Prefectural University
Street address 1-5 Hangi-cho, Shimogamo, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8522
Country Japan
Platform ID GPL13912
Series (2)
GSE97314 Microarray analysis of mouse skeletal muscle atrophied by aging
GSE97315 Microarray analysis of atrophied skeletal muscle models

Data table header descriptions
VALUE Normalized signal intensity

Data table
1 362
2 2
3 2
4 2
5 2
6 2
7 2
8 1634
9 2
10 2
11 2
12 2
13 56
14 502
15 2
16 2
17 425
18 2
19 133
20 6789

Total number of rows: 62976

Table truncated, full table size 531 Kbytes.

Supplementary file Size Download File type/resource
GSM2561521_US45102837_252800522179_S01_GE1_1100_Jul11_1_1.txt.gz 3.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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