|
| Status |
Public on Jun 17, 2019 |
| Title |
CLC9 |
| Sample type |
SRA |
| |
|
| Source name |
cell line
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: CLC9
library barcodes: ACAGTG
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted using Trizol (Invitrogen) according to the manufacturer’s instructions.
RNA libraries were prepared for sequencing using standard Illumina protocols.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
HCC81.genes.fpkm_table.log2.txt
|
| Data processing |
The reads were mapped to the human reference genome (HG38) using TopHat2
Cufflinks algorithm was used to calculate gene expressions. Then the expression profiles of all samples were normalized by the fragments per kilobase of exon per million fragments mapped (FPKM) method.
Genome_build: HG38
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each Sample
|
| |
|
| Submission date |
Mar 27, 2017 |
| Last update date |
Jun 17, 2019 |
| Contact name |
Lijian Hui |
| E-mail(s) |
huilab@sibcb.ac.cn
|
| Organization name |
CEMCS, CAS
|
| Department |
SIBCB
|
| Lab |
Huilab
|
| Street address |
yueyang road 320
|
| City |
Shanghai |
| ZIP/Postal code |
200031 |
| Country |
China |
| |
|
| Platform ID |
GPL11154 |
| Series (1) |
| GSE97098 |
RNAseq data of 81 liver cancer cell lines |
|
| Relations |
| BioSample |
SAMN06646073 |
| SRA |
SRX2676550 |
