|
| Status |
Public on Jan 09, 2008 |
| Title |
ENCODE spikein competition, amplified sample, NimbleGen array 96391 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
DNA plus artificial spike-in DNA. Source of DNA: Roche commercial DNA.
|
| Organism |
Homo sapiens |
| Characteristics |
artificial
|
| Biomaterial provider |
Generated by lab
|
| Treatment protocol |
amplification by "whole-genome amplification" method
|
| Growth protocol |
not applicable
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
artificial sample
|
| Label |
Cy5
|
| Label protocol |
Array processing by NimbleGen inc.
|
| |
|
| Channel 2 |
| Source name |
DNA without spikein (background DNA). Source of DNA: Roche commercial DNA.
|
| Organism |
Homo sapiens |
| Characteristics |
background DNA
|
| Biomaterial provider |
artificial
|
| Treatment protocol |
as channel 1
|
| Growth protocol |
not applicable; artificial sample
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
artificial sample
|
| Label |
Cy3
|
| Label protocol |
all array processing by NimbleGen Inc. See NimbleGen website for details.
|
| |
|
| |
| Hybridization protocol |
see www.nimblegen.com for array protocol information
|
| Scan protocol |
see www.nimblegen.com for array protocol information
|
| Description |
see www.nimblegen.com for array protocol information
IMPORTANT: same DNA samples as used in other arrays in this series; these are technical array replicates
|
| Data processing |
see www.nimblegen.com for array protocol information
|
| |
|
| Submission date |
Jan 07, 2008 |
| Last update date |
Jan 08, 2008 |
| Contact name |
Mark Bieda |
| E-mail(s) |
markb7002000@yahoo.com
|
| Organization name |
University of Calgary
|
| Department |
Biochemistry and Molecular Biology
|
| Lab |
Bieda
|
| Street address |
3330 Hospital Dr NW
|
| City |
Calgary |
| State/province |
AB |
| ZIP/Postal code |
T2N4N1 |
| Country |
Canada |
| |
|
| Platform ID |
GPL3980 |
| Series (2) |
| GSE10076 |
ENCODE spikein, amplified DNA samples, NimbleGen arrays |
| GSE10114 |
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets |
|
