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Sample GSM2507467 Query DataSets for GSM2507467
Status Public on Feb 25, 2017
Title 20mGyAA5/ reference male mouse8
Sample type genomic
 
Channel 1
Source name 20mGyAA5
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy5
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
Channel 2
Source name reference male mouse8
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy3
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
 
Hybridization protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
Scan protocol Scanned on an Agilent G2565BA scanner.
Images were quantified using Agilent Feature Extraction Software (version 10.7.1.1).
Description 20mGyAA5 Cy5
Data processing Agilent Genomic Workbench Software (v 7.0.) was used.
 
Submission date Feb 24, 2017
Last update date Apr 06, 2017
Contact name Keiji OGURA
E-mail(s) keogura@ies.or.jp
Phone +81-175-71-1965
Organization name Institute for Environmental Science
Department Department of Radiobiology
Street address Takahoko, Hacchasawa,
City Rokkasho-mura,Kamikita-gun,
State/province Aomori
ZIP/Postal code 039-3213
Country Japan
 
Platform ID GPL22239
Series (2)
GSE89425 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days
GSE95340 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days (Secondary screening for 20mGyAA familly).

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (Cy5/Cy3 or Cy3/Cy5) representing test/reference

Data table
ID_REF VALUE
104756 -0.020111702
8389 -0.041362002
117149 0.078922294
5460 0.11623189
147610 0.12972566
126506 0.030127324
41586 -0.048875432
68446 -0.06377648
81150 0.00687452
157943 0.08326036
155723 0.14685431
134886 0.21207711
168083 0.031776316
100769 0.10395126
25767 0.05905439
119053 -0.04383343
59416 0.17820999
169668 -0.046645653
70856 -0.20956363
120444 -0.12060105

Total number of rows: 140337

Table truncated, full table size 2484 Kbytes.




Supplementary file Size Download File type/resource
GSM2507467_US84300232_256355910007_S01_CGH_107_Sep09_1_2.txt.gz 15.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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