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Sample GSM2507461 Query DataSets for GSM2507461
Status Public on Feb 25, 2017
Title 20mGyAA2/ reference male mouse8
Sample type genomic
 
Channel 1
Source name 20mGyAA2
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy5
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
Channel 2
Source name reference male mouse8
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy3
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
 
Hybridization protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
Scan protocol Scanned on an Agilent G2565BA scanner.
Images were quantified using Agilent Feature Extraction Software (version 10.7.1.1).
Description 20mGyAA2 Cy5
Data processing Agilent Genomic Workbench Software (v 7.0.) was used.
 
Submission date Feb 24, 2017
Last update date Apr 06, 2017
Contact name Keiji OGURA
E-mail(s) keogura@ies.or.jp
Phone +81-175-71-1965
Organization name Institute for Environmental Science
Department Department of Radiobiology
Street address Takahoko, Hacchasawa,
City Rokkasho-mura,Kamikita-gun,
State/province Aomori
ZIP/Postal code 039-3213
Country Japan
 
Platform ID GPL22239
Series (2)
GSE89425 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days
GSE95340 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days (Secondary screening for 20mGyAA familly).

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (Cy5/Cy3 or Cy3/Cy5) representing test/reference

Data table
ID_REF VALUE
104756 -0.001534835
8389 0.07286317
117149 0.08037561
5460 0.24031234
147610 0.07930454
126506 0.10812857
41586 -0.005636751
68446 -0.107229576
81150 0.031215334
157943 0.029853635
155723 0.10240044
134886 0.09666148
168083 0.0649708
100769 0.107461765
25767 -0.022501124
119053 -0.023628252
59416 0.110700116
169668 0.04677482
70856 -0.026520915
120444 -0.026216166

Total number of rows: 140337

Table truncated, full table size 2478 Kbytes.




Supplementary file Size Download File type/resource
GSM2507461_US84300232_256355910002_S01_CGH_107_Sep09_1_4.txt.gz 15.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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