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Sample GSM2507459 Query DataSets for GSM2507459
Status Public on Feb 25, 2017
Title 20mGyAA1/ reference male mouse8
Sample type genomic
 
Channel 1
Source name 20mGyAA1
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy5
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
Channel 2
Source name reference male mouse8
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy3
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
 
Hybridization protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
Scan protocol Scanned on an Agilent G2565BA scanner.
Images were quantified using Agilent Feature Extraction Software (version 10.7.1.1).
Description 20mGyAA1 Cy5
Data processing Agilent Genomic Workbench Software (v 7.0.) was used.
 
Submission date Feb 24, 2017
Last update date Apr 06, 2017
Contact name Keiji OGURA
E-mail(s) keogura@ies.or.jp
Phone +81-175-71-1965
Organization name Institute for Environmental Science
Department Department of Radiobiology
Street address Takahoko, Hacchasawa,
City Rokkasho-mura,Kamikita-gun,
State/province Aomori
ZIP/Postal code 039-3213
Country Japan
 
Platform ID GPL22239
Series (2)
GSE89425 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days
GSE95340 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days (Secondary screening for 20mGyAA familly).

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (Cy5/Cy3 or Cy3/Cy5) representing test/reference

Data table
ID_REF VALUE
104756 0.06867585
8389 0.018581392
117149 0.20632698
5460 0.26671404
147610 0.20631784
126506 0.07667857
41586 -0.065032296
68446 -0.20728469
81150 0.1479877
157943 -0.09584088
155723 0.053130154
134886 0.24467006
168083 -0.013235644
100769 0.036205076
25767 0.045786522
119053 -0.05659499
59416 0.2026652
169668 -0.00625461
70856 -0.15318118
120444 -0.054424897

Total number of rows: 140337

Table truncated, full table size 2481 Kbytes.




Supplementary file Size Download File type/resource
GSM2507459_US84300232_256355910002_S01_CGH_107_Sep09_1_2.txt.gz 15.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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