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Sample GSM2507456 Query DataSets for GSM2507456
Status Public on Feb 25, 2017
Title 20mGyAAF/ reference male mouse8
Sample type genomic
 
Channel 1
Source name 20mGyAAF
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy5
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
Channel 2
Source name reference male mouse8
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy3
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
 
Hybridization protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
Scan protocol Scanned on an Agilent G2565BA scanner.
Images were quantified using Agilent Feature Extraction Software (version 10.7.1.1).
Description 20mGyAAF Cy5
Data processing Agilent Genomic Workbench Software (v 7.0.) was used.
 
Submission date Feb 24, 2017
Last update date Apr 06, 2017
Contact name Keiji OGURA
E-mail(s) keogura@ies.or.jp
Phone +81-175-71-1965
Organization name Institute for Environmental Science
Department Department of Radiobiology
Street address Takahoko, Hacchasawa,
City Rokkasho-mura,Kamikita-gun,
State/province Aomori
ZIP/Postal code 039-3213
Country Japan
 
Platform ID GPL22239
Series (2)
GSE89425 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days
GSE95340 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days (Secondary screening for 20mGyAA familly).

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (Cy5/Cy3 or Cy3/Cy5) representing test/reference

Data table
ID_REF VALUE
104756 0.04254952
8389 -0.09296653
117149 0.07162739
5460 0.017359542
147610 -0.084982134
126506 -0.09803049
41586 -0.09988322
68446 -0.2178532
81150 0.018254258
157943 0.012712151
155723 0.14965713
134886 -0.03411783
168083 -0.03134715
100769 0.082810625
25767 -0.03714861
119053 -0.13946898
59416 0.3035629
169668 0.021168793
70856 -0.018712692
120444 -0.15398875

Total number of rows: 140337

Table truncated, full table size 2476 Kbytes.




Supplementary file Size Download File type/resource
GSM2507456_US84300232_256355910001_S01_CGH_107_Sep09_1_3.txt.gz 15.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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