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Sample GSM2507193 Query DataSets for GSM2507193
Status Public on Feb 25, 2017
Title 20mGyG5/ reference male mouse2
Sample type genomic
 
Channel 1
Source name 20mGyG5
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy5
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
Channel 2
Source name reference male mouse2
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy3
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
 
Hybridization protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
Scan protocol Scanned on an Agilent G2565BA scanner.
Images were quantified using Agilent Feature Extraction Software (version 10.7.1.1).
Description 20mGyG5 Cy5
Data processing Agilent Genomic Workbench Software (v 7.0.) was used.
 
Submission date Feb 24, 2017
Last update date Apr 06, 2017
Contact name Keiji OGURA
E-mail(s) keogura@ies.or.jp
Phone +81-175-71-1965
Organization name Institute for Environmental Science
Department Department of Radiobiology
Street address Takahoko, Hacchasawa,
City Rokkasho-mura,Kamikita-gun,
State/province Aomori
ZIP/Postal code 039-3213
Country Japan
 
Platform ID GPL22217
Series (2)
GSE89425 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days
GSE95319 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days (Secondary screening for 20mGyG familly).

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (Cy5/Cy3 or Cy3/Cy5) representing test/reference

Data table
ID_REF VALUE
35062 0.06350677
32124 0.45190388
19992 -0.033694897
111316 -0.03885257
22131 0.009861023
44606 -0.05660524
113738 0.11205476
28916 -0.09287013
96316 -0.035570476
80468 0.964533
96993 0.39685267
168307 0.36766997
104377 0.9924296
36277 -0.06397274
9574 -0.17213532
105499 0.09464058
82182 0.10394844
161340 0.46543217
75369 -0.030289182
63554 0.18623972

Total number of rows: 58203

Table truncated, full table size 1024 Kbytes.




Supplementary file Size Download File type/resource
GSM2507193_US84300232_253394210004_S01_CGH_107_Sep09_1_2.txt.gz 6.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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