NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2507184 Query DataSets for GSM2507184
Status Public on Feb 25, 2017
Title reference male mouse2/ 20mGyG1
Sample type genomic
 
Channel 1
Source name reference male mouse2
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy5
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
Channel 2
Source name 20mGyG1
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy3
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
 
Hybridization protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
Scan protocol Scanned on an Agilent G2565BA scanner.
Images were quantified using Agilent Feature Extraction Software (version 10.7.1.1).
Description 20mGyG1 Cy3
Data processing Agilent Genomic Workbench Software (v 7.0.) was used.
 
Submission date Feb 24, 2017
Last update date Apr 06, 2017
Contact name Keiji OGURA
E-mail(s) keogura@ies.or.jp
Phone +81-175-71-1965
Organization name Institute for Environmental Science
Department Department of Radiobiology
Street address Takahoko, Hacchasawa,
City Rokkasho-mura,Kamikita-gun,
State/province Aomori
ZIP/Postal code 039-3213
Country Japan
 
Platform ID GPL22217
Series (2)
GSE89425 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days
GSE95319 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days (Secondary screening for 20mGyG familly).

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (Cy5/Cy3 or Cy3/Cy5) representing test/reference

Data table
ID_REF VALUE
35062 -0.24995214
32124 -0.018369732
19992 -0.01780769
111316 0.101388164
22131 0.03877289
44606 0.14481057
113738 0.12448206
28916 -0.06896954
96316 -0.08530715
80468 -0.002589403
96993 -0.3537828
168307 -0.28124437
104377 -0.08189616
36277 0.026450152
9574 -0.11047813
105499 -0.04251595
82182 0.04665462
161340 -0.477473
75369 -0.1908883
63554 -0.2658922

Total number of rows: 58203

Table truncated, full table size 1020 Kbytes.




Supplementary file Size Download File type/resource
GSM2507184_US84300232_253394210002_S01_CGH_107_Sep09_1_1.txt.gz 6.7 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap