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Sample GSM2507183 Query DataSets for GSM2507183
Status Public on Feb 25, 2017
Title 20mGyGF/ reference male mouse2
Sample type genomic
 
Channel 1
Source name 20mGyGF
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy5
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
Channel 2
Source name reference male mouse2
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy3
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
 
Hybridization protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
Scan protocol Scanned on an Agilent G2565BA scanner.
Images were quantified using Agilent Feature Extraction Software (version 10.7.1.1).
Description 20mGyGF Cy5
Data processing Agilent Genomic Workbench Software (v 7.0.) was used.
 
Submission date Feb 24, 2017
Last update date Apr 06, 2017
Contact name Keiji OGURA
E-mail(s) keogura@ies.or.jp
Phone +81-175-71-1965
Organization name Institute for Environmental Science
Department Department of Radiobiology
Street address Takahoko, Hacchasawa,
City Rokkasho-mura,Kamikita-gun,
State/province Aomori
ZIP/Postal code 039-3213
Country Japan
 
Platform ID GPL22217
Series (2)
GSE89425 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days
GSE95319 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days (Secondary screening for 20mGyG familly).

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (Cy5/Cy3 or Cy3/Cy5) representing test/reference

Data table
ID_REF VALUE
35062 0.17777713
32124 0.16159521
19992 -0.1913694
111316 0.106298186
22131 -0.006002432
44606 0.1540727
113738 -0.03471713
28916 -0.10220167
96316 0.02070893
80468 -0.073043175
96993 0.31129235
168307 0.23648356
104377 0.45582327
36277 -0.20183122
9574 0.17516221
105499 0.029499462
82182 -0.48228842
161340 0.27178007
75369 0.3958753
63554 0.27483523

Total number of rows: 58203

Table truncated, full table size 1022 Kbytes.




Supplementary file Size Download File type/resource
GSM2507183_US84300232_253394210001_S01_CGH_107_Sep09_1_4.txt.gz 6.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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