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Sample GSM25 Query DataSets for GSM25
Status Public on Jan 24, 2001
Title NHGRI_TD-1348
Sample type RNA
 
Channel 1
Source name melanoma, shoulder
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NHGRI_Melanoma_Ref
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Biopsy location: shoulder
Patient sex: male
Patient age: 29
Passage number: biopsy
p16 mutation status: ND
Invasive ability: ND
Vasculogenic mimicry: ND
Gel contraction: ND
Cell motility: ND
Scratch wound (%): ND

See http://www.nhgri.nih.gov/DIR/Microarray/Nature_paper.pdf
and http://www.nhgri.nih.gov/DIR/Microarray/Melanoma_Supplement/index.html
 
Submission date Jan 08, 2001
Last update date May 27, 2005
Contact name Michael Bittner
E-mail(s) mbittner@nhgri.nih.gov
Phone 301-496-7980
Fax 301-402-3241
URL http://www.nhgri.nih.gov/Intramural_research/People/bittnerm.html
Organization name NHGRI, NIH
Department Cancer Genetics Branch
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL7
Series (1)
GSE1 NHGRI_Melanoma_class

Data table header descriptions
ID_REF
CH1_TARGET_TOP Sample 1 (Red Channel) target location in image - top
CH1_TARGET_LT Sample 1 (Red Channel) target location in image - left
CH1_TARGET_BOT Sample 1 (Red Channel) target location in image - bottom
CH1_TARGET_RT Sample 1 (Red Channel) target location in image - right
CH1_RAW Sample 1 (Red Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_AREA Sample 1 (Red Channel) Area
CH1_BKD_MEAN Sample 1 (Red Channel) Mean Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_TARGET_TOP Sample 2 (Green Channel) target location in image - top
CH2_TARGET_LT Sample 2 Green Channel) target location in image - left
CH2_TARGET_BOT Sample 2 Green Channel) target location in image - bottom
CH2_TARGET_RT Sample 2 Green Channel) target location in image - right
CH2_RAW Sample 2 Green Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_AREA Sample 2 Green Channel) Area
CH2_BKD_MEAN Sample 2 Green Channel) Mean Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
UNION_AREA Union Area
RATIO Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level - fixed at 99%
CONF_LOW Confidence Interval - Lower Bound - Raw Ratio
CONF_UP Confidence Interval - Upper Bound - Raw Ratio
NORM_FACTOR M-value
CV Coefficient of variance
PRE_VALUE Calibrated Ratio

Data table
ID_REF CH1_TARGET_TOP CH1_TARGET_LT CH1_TARGET_BOT CH1_TARGET_RT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TARGET_TOP CH2_TARGET_LT CH2_TARGET_BOT CH2_TARGET_RT CH2_RAW CH1_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL CONF_LOW CONF_UP NORM_FACTOR CV PRE_VALUE
1 77 156 95 174 2109572 15232.3 5402.0 145 166.0 110.5 77 156 95 174 3752509 23176.2 8404.8 129 4214.4 314.1 145 0.657 -0.2358243 99.000 0.410 3.122 1.131 0.233 0.581
2 95 156 113 174 1310496 9556.9 3269.4 143 150.5 99.8 95 156 113 174 3370071 20778.8 10560.3 120 4184.6 287.3 143 0.460 -0.3904063 99.000 0.410 3.122 1.131 0.233 0.407
3 113 156 131 174 51717 1116.3 571.3 48 145.1 97.2 113 156 131 174 230838 1432.7 949.1 18 4197.5 291.1 49 0.779 -0.1617813 99.000 0.410 3.122 1.131 0.233 0.689
4 131 156 149 174 511383 4048.6 1209.5 130 143.1 97.2 131 156 149 174 984476 3899.8 1604.7 116 4169.7 279.7 130 1.038 -0.0371573 99.000 0.410 3.122 1.131 0.233 0.918
5 150 156 168 174 935796 7339.1 2638.1 133 147.3 100.9 150 156 168 174 1461228 7532.8 3226.6 114 4157.1 275.6 133 0.974 -0.0644933 99.000 0.410 3.122 1.131 0.233 0.862
6 168 156 186 174 235649 1959.8 621.9 112 163.2 112.8 168 156 186 174 717146 2308.8 905.2 111 4152.0 278.1 119 0.849 -0.1243603 99.000 0.410 3.122 1.131 0.233 0.751
7 186 156 204 174 602120 4691.6 1330.7 132 164.2 114.8 186 156 204 174 1154375 5132.2 1639.6 121 4177.3 304.1 132 0.914 -0.0925893 99.000 0.410 3.122 1.131 0.233 0.808
8 204 156 222 174 2195216 15982.9 5701.9 144 158.4 114.2 204 156 222 174 4075815 25789.7 11133.9 133 4179.6 313.7 144 0.620 -0.2612193 99.000 0.410 3.122 1.131 0.233 0.548
9 222 156 240 174 2841383 20433.0 7492.5 146 156.7 116.1 222 156 240 174 3381036 20301.5 8535.8 128 4198.8 332.6 146 1.006 -0.0506103 99.000 0.410 3.122 1.131 0.233 0.890
10 241 156 259 174 4529765 32668.9 18484.7 146 155.5 115.3 241 156 259 174 5664667 36850.9 21139.0 124 4197.5 332.2 146 0.887 -0.1056843 99.000 0.410 3.122 1.131 0.233 0.784
11 259 156 277 174 1658015 13116.0 4888.4 133 148.2 109.2 259 156 277 174 3448886 23407.5 9962.3 118 4183.6 328.5 133 0.560 -0.3053953 99.000 0.410 3.122 1.131 0.233 0.495
12 277 156 295 174 3418902 25366.0 11749.5 142 148.2 109.1 277 156 295 174 6102648 41368.5 18647.8 130 4173.7 326.6 142 0.613 -0.2660013 99.000 0.410 3.122 1.131 0.233 0.542
13 71 768 89 786 247518 2367.5 879.9 99 158.2 107.2 71 768 89 786 668202 2684.3 1183.9 98 4134.1 305.2 106 0.882 -0.1079053 99.000 0.410 3.122 1.131 0.233 0.780
14 89 768 107 786 48146 957.9 439.7 50 161.7 107.5 89 768 107 786 229459 1221.5 683.8 33 4114.8 288.6 51 0.784 -0.1592673 99.000 0.410 3.122 1.131 0.233 0.693
15 107 768 125 786 678854 5627.6 2485.9 124 174.6 119.9 107 768 125 786 1586200 9447.5 4710.9 107 4109.8 282.9 125 0.596 -0.2781893 99.000 0.410 3.122 1.131 0.233 0.527
16 126 768 144 786 297420 2629.9 1071.1 106 175.9 121.3 126 768 144 786 1530205 10326.0 4158.4 104 4109.9 285.8 114 0.255 -0.6478173 99.000 0.410 3.122 1.131 0.233 0.225
17 144 768 162 786 598863 5933.5 2794.8 105 177.3 117.5 144 768 162 786 772827 3772.5 2155.0 88 4113.5 283.0 106 1.573 0.1433273 99.000 0.410 3.122 1.131 0.233 1.391
18 162 768 180 786 2846788 19998.0 10070.2 149 191.9 120.0 162 768 180 786 4068963 24735.5 13434.4 130 4122.4 293.4 149 0.808 -0.1456943 99.000 0.410 3.122 1.131 0.233 0.715
19 181 768 199 786 399843 4007.3 1716.6 100 201.5 123.9 181 768 199 786 771158 3965.9 1997.2 93 4151.5 311.5 103 1.010 -0.0491493 99.000 0.410 3.122 1.131 0.233 0.893
20 199 768 217 786 5828530 38925.9 23766.5 157 191.8 115.8 199 768 217 786 6076960 36634.1 23258.4 122 4150.9 315.7 157 1.063 -0.0268723 99.000 0.410 3.122 1.131 0.233 0.940

Total number of rows: 8192

Table truncated, full table size 1298 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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