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Sample GSM2464866 Query DataSets for GSM2464866
Status Public on Jan 23, 2017
Title OE_WT_rep2
Sample type SRA
 
Source name Yeast
Organism Schizosaccharomyces pombe
Characteristics genotype: Wild type
Extracted molecule polyA RNA
Extraction protocol RNA libraries were prepared for sequencing using standard Illumina protocols
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Data processing RNA-seq reads that pass the Illumina filter were aligned to the S. pombe genome reference sequences using TopHat with default mapping parameters
The raw read count for each gene was produced by HTSeq
DESeq package was used to identify the differentially expressed genes between rbm10Δ cells and WT
Genome_build: ASM294v2
Supplementary_files_format_and_content: tab-delimited text files include read cout for each Sample
 
Submission date Jan 22, 2017
Last update date May 15, 2019
Contact name QINGSONG GAO
E-mail(s) gaoqs313@gmail.com
Organization name ST JUDE CHILDREN'S RESEARCH HOSPITAL
Street address 262 DANNY THOMAS PLACE
City MEMPHIS
State/province Tennessee
ZIP/Postal code 38105
Country USA
 
Platform ID GPL13988
Series (1)
GSE93906 Rbm10 promotes heterochromatin assembly by interacting with Clr6 and chromatin remodeling complexes
Relations
BioSample SAMN06249267
SRA SRX2510386

Supplementary file Size Download File type/resource
GSM2464866_OE_WT_rep2.txt.gz 40.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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