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Sample GSM2458732 Query DataSets for GSM2458732
Status Public on Jan 14, 2017
Title IPF_1092, Timepoint 0
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: female
survival (months): 16
age (years): 66
fvc: 106
dlco: 62.8
composite_end_point: 1
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 0
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 2.742309049
7892502 3.184362538
7892503 2.326922695
7892504 7.726867281
7892505 1.503411134
7892506 1.605650631
7892507 4.578191441
7892508 2.469869903
7892509 7.975425897
7892510 2.355511508
7892511 4.610889348
7892512 3.867980377
7892513 1.390291822
7892514 7.424905089
7892515 8.389717604
7892516 5.105296266
7892517 4.855018332
7892518 1.169359737
7892519 2.206549273
7892520 7.784686491

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458732_IPF_1092_0.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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