NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2458731 Query DataSets for GSM2458731
Status Public on Jan 14, 2017
Title IPF_1085, Timepoint 0
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: female
survival (months): 17
age (years): 56
fvc: 71.5
dlco: 56
composite_end_point: 0
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 0
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 2.066699246
7892502 2.598201424
7892503 3.099715808
7892504 7.841552239
7892505 1.756603486
7892506 1.375539979
7892507 5.630952027
7892508 2.167367127
7892509 8.063788379
7892510 3.64594583
7892511 5.521570078
7892512 2.890933405
7892513 2.905813293
7892514 8.288867919
7892515 8.055948858
7892516 6.012358406
7892517 4.671346613
7892518 1.510134237
7892519 2.264398231
7892520 8.136822754

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458731_IPF_1085_0.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap