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Sample GSM2458729 Query DataSets for GSM2458729
Status Public on Jan 14, 2017
Title IPF_1065, Timepoint 0
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: male
survival (months): 22
age (years): 50
fvc: 59.2
dlco: 30.2
composite_end_point: 0
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 0
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.239720091
7892502 2.696740536
7892503 3.08525483
7892504 7.803233147
7892505 2.294041194
7892506 1.387217372
7892507 4.803280649
7892508 3.182589124
7892509 7.989494985
7892510 1.654494921
7892511 4.638689656
7892512 2.536530709
7892513 1.866266703
7892514 7.041950582
7892515 8.303407194
7892516 4.476009652
7892517 4.468042743
7892518 1.648527136
7892519 2.403935118
7892520 7.758725765

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458729_IPF_1065_0.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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