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Sample GSM2458727 Query DataSets for GSM2458727
Status Public on Jan 14, 2017
Title IPF_1060, Timepoint 0
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: male
survival (months): 15
age (years): 70
fvc: 45.2
dlco: 15.5
composite_end_point: 1
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 0
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.901225525
7892502 2.950728675
7892503 1.956842084
7892504 7.783587318
7892505 1.824292177
7892506 1.474238704
7892507 5.626334023
7892508 2.439000089
7892509 7.900865888
7892510 2.266724236
7892511 4.790207353
7892512 2.89539677
7892513 2.154803651
7892514 7.743444828
7892515 7.993350427
7892516 6.560605509
7892517 5.725030462
7892518 1.822162404
7892519 1.896141534
7892520 8.09171775

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458727_IPF_1060_0.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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