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Sample GSM2458721 Query DataSets for GSM2458721
Status Public on Jan 14, 2017
Title IPF_1049, Timepoint 0
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: male
survival (months): 7
age (years): 69
fvc: 60.1
dlco: 30
composite_end_point: 1
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 0
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 2.613527739
7892502 2.12891228
7892503 1.979771815
7892504 7.860332485
7892505 1.363801199
7892506 2.089703353
7892507 3.759063371
7892508 2.549388364
7892509 8.005625214
7892510 2.258593686
7892511 3.754084251
7892512 3.227387063
7892513 2.15514856
7892514 7.339435882
7892515 8.512775115
7892516 5.135963045
7892517 5.10455867
7892518 1.521674257
7892519 1.743416449
7892520 7.793811897

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458721_IPF_1049_0.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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