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Sample GSM2458719 Query DataSets for GSM2458719
Status Public on Jan 14, 2017
Title IPF_1046, Timepoint 0
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: male
survival (months): 26
age (years): 51
fvc: 83.4
dlco: 48
composite_end_point: 0
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 0
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.235372998
7892502 2.684932254
7892503 2.057330828
7892504 7.817345076
7892505 1.628180347
7892506 1.763185457
7892507 3.766019239
7892508 1.775620051
7892509 7.852372656
7892510 3.041418039
7892511 4.319447445
7892512 3.69170133
7892513 2.528614358
7892514 7.260213927
7892515 8.099313024
7892516 5.176845547
7892517 3.586461302
7892518 2.176846067
7892519 2.051510656
7892520 7.987503406

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458719_IPF_1046_0.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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