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Sample GSM2458718 Query DataSets for GSM2458718
Status Public on Jan 14, 2017
Title IPF_1045, Timepoint 3
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 3
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.755174496
7892502 2.482950143
7892503 1.726149252
7892504 8.025721807
7892505 1.276206291
7892506 1.341052679
7892507 5.124604528
7892508 2.514705229
7892509 7.737835143
7892510 2.225257695
7892511 4.099558921
7892512 2.676358392
7892513 1.400907153
7892514 7.083268806
7892515 8.099642231
7892516 5.006149002
7892517 4.63742272
7892518 1.703195609
7892519 1.781070716
7892520 7.602951661

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458718_IPF_1045_3.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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