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Sample GSM2458717 Query DataSets for GSM2458717
Status Public on Jan 14, 2017
Title IPF_1045, Timepoint 2
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 2
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 3.140504858
7892502 1.72388821
7892503 1.58264364
7892504 7.368904715
7892505 2.916826445
7892506 1.924670797
7892507 4.269949298
7892508 2.813619963
7892509 7.580117361
7892510 3.169790727
7892511 4.464486426
7892512 3.244208312
7892513 2.770568257
7892514 7.079424078
7892515 8.226748743
7892516 5.063756899
7892517 4.788140584
7892518 1.658680606
7892519 1.818313044
7892520 7.743958469

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458717_IPF_1045_2.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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