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Sample GSM2458715 Query DataSets for GSM2458715
Status Public on Jan 14, 2017
Title IPF_1044, Timepoint 2
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 2
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 2.214279364
7892502 2.74328318
7892503 1.618713534
7892504 7.928198126
7892505 1.765625787
7892506 4.499939433
7892507 2.638312297
7892508 4.297267552
7892509 7.596288608
7892510 1.785085983
7892511 5.096762915
7892512 3.275939305
7892513 2.560670638
7892514 6.717263707
7892515 8.268441229
7892516 4.944089794
7892517 4.828098025
7892518 1.645590271
7892519 2.664809821
7892520 7.355581594

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458715_IPF_1044_2.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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