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Sample GSM2458712 Query DataSets for GSM2458712
Status Public on Jan 14, 2017
Title IPF_1043, Timepoint 0
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: female
survival (months): 5
age (years): 84
fvc: 52.9
dlco: 36.6
composite_end_point: 1
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 0
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.868599264
7892502 2.431889125
7892503 2.095317233
7892504 7.604762807
7892505 1.245456074
7892506 2.786574738
7892507 4.311898353
7892508 2.248059373
7892509 6.861924039
7892510 2.08408297
7892511 5.069272901
7892512 3.28367052
7892513 2.238264389
7892514 7.622381125
7892515 8.308055425
7892516 5.385743427
7892517 5.091253931
7892518 1.468071783
7892519 2.029104158
7892520 7.411939564

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458712_IPF_1043_0.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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