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Sample GSM2458711 Query DataSets for GSM2458711
Status Public on Jan 14, 2017
Title IPF_1042, Timepoint 3
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 3
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.278054503
7892502 3.599373613
7892503 2.056864658
7892504 7.063353719
7892505 2.082488585
7892506 2.348695848
7892507 4.118113177
7892508 3.130225206
7892509 7.404243516
7892510 2.37243184
7892511 4.404091961
7892512 3.828698937
7892513 2.384330668
7892514 6.91203979
7892515 7.990444889
7892516 4.429705561
7892517 3.753518065
7892518 2.449210192
7892519 2.11453041
7892520 7.440219985

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458711_IPF_1042_3.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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