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Sample GSM2458710 Query DataSets for GSM2458710
Status Public on Jan 14, 2017
Title IPF_1042, Timepoint 1
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 1
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 3.041258518
7892502 2.594849073
7892503 2.359010721
7892504 7.611326464
7892505 1.530606622
7892506 1.559839317
7892507 3.261117475
7892508 3.065081535
7892509 8.378179155
7892510 1.839938414
7892511 4.487282278
7892512 3.599241804
7892513 2.396057586
7892514 7.08913535
7892515 7.993081764
7892516 5.516670319
7892517 4.622551645
7892518 1.737233534
7892519 1.928936115
7892520 7.395968292

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458710_IPF_1042_1.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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