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Sample GSM2458709 Query DataSets for GSM2458709
Status Public on Jan 14, 2017
Title IPF_1042, Timepoint 0
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: male
survival (months): 27
age (years): 69
fvc: 65.4
dlco: 38.7
composite_end_point: 0
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 0
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 2.696701413
7892502 3.227212592
7892503 2.158664505
7892504 8.336238104
7892505 1.393471926
7892506 1.626338134
7892507 5.05148874
7892508 2.67531853
7892509 8.387664509
7892510 2.255014989
7892511 4.29102534
7892512 4.182795791
7892513 1.905941421
7892514 7.857817585
7892515 8.594249595
7892516 5.444081819
7892517 4.485972625
7892518 1.279355671
7892519 2.168114793
7892520 8.264116645

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458709_IPF_1042_0.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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