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Sample GSM2458707 Query DataSets for GSM2458707
Status Public on Jan 14, 2017
Title IPF_1041, Timepoint 1
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 1
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.508918537
7892502 2.489288137
7892503 2.293657567
7892504 7.465514047
7892505 2.880482425
7892506 2.617839402
7892507 4.949282137
7892508 3.283144245
7892509 7.467071546
7892510 1.454546523
7892511 4.775511964
7892512 4.64810343
7892513 2.951571956
7892514 6.634786759
7892515 8.023490105
7892516 4.193308741
7892517 4.890209099
7892518 1.469215497
7892519 2.074725472
7892520 7.169519005

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458707_IPF_1041_1.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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