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Sample GSM2458706 Query DataSets for GSM2458706
Status Public on Jan 14, 2017
Title IPF_1041, Timepoint 0
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: female
survival (months): 22
age (years): 55
fvc: 79.5
dlco: 41.2
composite_end_point: 1
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 0
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 3.971309136
7892502 2.930636648
7892503 1.809520716
7892504 8.095835303
7892505 1.295283412
7892506 1.576136836
7892507 4.302053013
7892508 2.489016089
7892509 7.440831411
7892510 2.546379489
7892511 4.375641543
7892512 2.573367581
7892513 1.975294712
7892514 6.696588237
7892515 8.21782618
7892516 5.986626996
7892517 5.79178542
7892518 1.212651588
7892519 2.337233481
7892520 7.657039295

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458706_IPF_1041_0.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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