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Sample GSM2458702 Query DataSets for GSM2458702
Status Public on Jan 14, 2017
Title IPF_1040, Timepoint 1
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 1
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.706343917
7892502 2.331691299
7892503 2.740548373
7892504 7.745092771
7892505 2.496247637
7892506 1.764489923
7892507 4.133050054
7892508 3.128370782
7892509 7.935280148
7892510 3.70665366
7892511 3.733491102
7892512 3.877604612
7892513 2.469433218
7892514 7.498916959
7892515 8.279412329
7892516 5.747355562
7892517 4.487411972
7892518 1.567774524
7892519 3.162979267
7892520 8.123571091

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458702_IPF_1040_1.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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