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Sample GSM2458700 Query DataSets for GSM2458700
Status Public on Jan 14, 2017
Title IPF_1039, Timepoint 3
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 3
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 3.244793498
7892502 2.837054537
7892503 2.350143973
7892504 7.241169395
7892505 2.743770744
7892506 3.552857691
7892507 3.059081395
7892508 1.674369583
7892509 6.376654543
7892510 4.315917171
7892511 4.861795207
7892512 2.330725707
7892513 1.503144389
7892514 6.875400118
7892515 7.933620021
7892516 6.157361962
7892517 4.76452337
7892518 1.680884125
7892519 3.052764848
7892520 8.018371582

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458700_IPF_1039_3.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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