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Sample GSM2458699 Query DataSets for GSM2458699
Status Public on Jan 14, 2017
Title IPF_1039, Timepoint 2
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 2
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.44093503
7892502 2.995911038
7892503 2.496206087
7892504 7.465287509
7892505 1.722845117
7892506 1.429718109
7892507 3.645281964
7892508 2.331090711
7892509 7.839767977
7892510 2.152882654
7892511 3.890933027
7892512 3.488532906
7892513 2.405187108
7892514 7.122496982
7892515 7.741768143
7892516 4.062990627
7892517 3.944498857
7892518 1.402861979
7892519 1.744916752
7892520 7.313057364

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458699_IPF_1039_2.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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