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Sample GSM2458698 Query DataSets for GSM2458698
Status Public on Jan 14, 2017
Title IPF_1039, Timepoint 1
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 1
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.449882451
7892502 1.961578265
7892503 1.89330374
7892504 8.03421698
7892505 2.196914795
7892506 1.567427916
7892507 2.844021912
7892508 2.911867161
7892509 6.697139832
7892510 2.330414706
7892511 4.294812248
7892512 2.507850052
7892513 1.4065116
7892514 6.589679809
7892515 8.435577563
7892516 2.854590928
7892517 4.541750771
7892518 1.696469486
7892519 1.905833883
7892520 8.294375708

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458698_IPF_1039_1.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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