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Sample GSM2458696 Query DataSets for GSM2458696
Status Public on Jan 14, 2017
Title IPF_1038, Timepoint 4
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 4
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.875900815
7892502 2.96061561
7892503 2.210389938
7892504 7.158995839
7892505 1.539403902
7892506 1.731682158
7892507 4.71959857
7892508 4.05913038
7892509 8.031302323
7892510 2.165704515
7892511 4.58055171
7892512 3.79048794
7892513 2.326040991
7892514 7.654361426
7892515 7.935150105
7892516 4.722069375
7892517 5.290279228
7892518 1.450010405
7892519 1.85834674
7892520 7.83892694

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458696_IPF_1038_4.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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