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Sample GSM2458693 Query DataSets for GSM2458693
Status Public on Jan 14, 2017
Title IPF_1038, Timepoint 1
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 1
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 2.351900878
7892502 2.274034403
7892503 2.303329192
7892504 7.953538578
7892505 1.728663224
7892506 1.814430139
7892507 3.685908379
7892508 3.12503346
7892509 7.983723475
7892510 2.497069747
7892511 4.515969355
7892512 3.863191811
7892513 1.881600842
7892514 7.178776577
7892515 8.308284889
7892516 5.510906278
7892517 4.895490826
7892518 1.416804387
7892519 1.522475755
7892520 7.295103947

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458693_IPF_1038_1.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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