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Sample GSM2458691 Query DataSets for GSM2458691
Status Public on Jan 14, 2017
Title IPF_1037, Timepoint 3
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 3
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.242961991
7892502 2.708528804
7892503 2.723089395
7892504 7.401553748
7892505 1.866499832
7892506 1.57521058
7892507 4.908272893
7892508 4.117154736
7892509 6.976192563
7892510 1.517008065
7892511 3.552612249
7892512 4.989518057
7892513 3.144389109
7892514 6.207732278
7892515 7.974275369
7892516 4.287195236
7892517 4.839759074
7892518 1.56462453
7892519 1.571991203
7892520 7.293390296

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458691_IPF_1037_3.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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