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Sample GSM2458690 Query DataSets for GSM2458690
Status Public on Jan 14, 2017
Title IPF_1037, Timepoint 2
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 2
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 2.504103096
7892502 1.774643808
7892503 1.82481889
7892504 7.839305612
7892505 1.870571655
7892506 4.224833234
7892507 3.345973297
7892508 2.028715564
7892509 7.494759429
7892510 2.945808221
7892511 4.224753898
7892512 3.972367697
7892513 2.308896968
7892514 7.136109875
7892515 8.168866836
7892516 3.553761182
7892517 4.776968809
7892518 1.92542211
7892519 1.324645864
7892520 7.678273616

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458690_IPF_1037_2.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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