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Sample GSM2458689 Query DataSets for GSM2458689
Status Public on Jan 14, 2017
Title IPF_1037, Timepoint 1
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 1
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.867782448
7892502 4.137969864
7892503 3.273105083
7892504 7.340876985
7892505 1.673524905
7892506 3.465655088
7892507 4.199822596
7892508 1.275641995
7892509 7.173431934
7892510 2.681639309
7892511 3.009373064
7892512 3.877372317
7892513 1.539153455
7892514 7.026215949
7892515 7.955738357
7892516 4.269720738
7892517 3.733249146
7892518 1.462934151
7892519 1.601487791
7892520 7.194343361

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458689_IPF_1037_1.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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