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Sample GSM2458686 Query DataSets for GSM2458686
Status Public on Jan 14, 2017
Title IPF_1036, Timepoint 1
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 1
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 2.732781269
7892502 2.182723655
7892503 2.137985562
7892504 7.462455785
7892505 1.585515664
7892506 1.693922719
7892507 4.66248036
7892508 2.402709232
7892509 7.906454446
7892510 1.742386364
7892511 4.448344356
7892512 3.782480127
7892513 1.922521122
7892514 7.331148845
7892515 8.283881889
7892516 3.068035107
7892517 4.418875503
7892518 1.660188363
7892519 2.059379278
7892520 7.358464877

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458686_IPF_1036_1.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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