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Sample GSM2458677 Query DataSets for GSM2458677
Status Public on Jan 14, 2017
Title IPF_1031, Timepoint 3
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 3
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.269623459
7892502 3.271183432
7892503 1.803880094
7892504 6.972827295
7892505 1.65800109
7892506 3.003033203
7892507 4.714432178
7892508 2.387443416
7892509 7.867672276
7892510 2.41288577
7892511 4.05473275
7892512 3.301926224
7892513 1.711361835
7892514 6.233982747
7892515 7.709334051
7892516 3.337789804
7892517 4.230448864
7892518 2.158438807
7892519 2.730548242
7892520 7.131411832

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458677_IPF_1031_3.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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