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Sample GSM2458676 Query DataSets for GSM2458676
Status Public on Jan 14, 2017
Title IPF_1031, Timepoint 2
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 2
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.678459507
7892502 2.676511871
7892503 2.304872537
7892504 7.628394834
7892505 1.155925459
7892506 2.390670384
7892507 2.628177732
7892508 2.078741778
7892509 7.993748553
7892510 2.061432752
7892511 4.381352847
7892512 3.442021268
7892513 2.733574556
7892514 6.954857746
7892515 8.238886987
7892516 5.34147541
7892517 3.869944126
7892518 1.900676748
7892519 1.2649286
7892520 7.062322475

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458676_IPF_1031_2.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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