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Sample GSM2458673 Query DataSets for GSM2458673
Status Public on Jan 14, 2017
Title IPF_1030, Timepoint 4
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 4
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.909688146
7892502 2.309749113
7892503 1.570814579
7892504 7.185965089
7892505 1.769108267
7892506 2.14032678
7892507 4.419793905
7892508 2.511467317
7892509 7.521646563
7892510 2.93689287
7892511 4.957470534
7892512 3.911094385
7892513 2.053684349
7892514 6.964590788
7892515 8.132657062
7892516 5.415728774
7892517 5.594822207
7892518 1.704502238
7892519 2.063686017
7892520 6.934437586

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458673_IPF_1030_4.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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