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Sample GSM2458671 Query DataSets for GSM2458671
Status Public on Jan 14, 2017
Title IPF_1030, Timepoint 2
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 2
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 2.914382351
7892502 2.139299566
7892503 2.028020397
7892504 7.534591023
7892505 2.793910982
7892506 2.363205514
7892507 4.77618836
7892508 2.883830796
7892509 8.14905402
7892510 2.590198714
7892511 4.54740596
7892512 4.019457638
7892513 1.565586919
7892514 7.102440794
7892515 7.992017064
7892516 6.013417234
7892517 4.768273988
7892518 1.428546186
7892519 2.090872682
7892520 7.629122915

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458671_IPF_1030_2.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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