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Sample GSM2458670 Query DataSets for GSM2458670
Status Public on Jan 14, 2017
Title IPF_1030, Timepoint 1
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 1
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.459383806
7892502 2.779149675
7892503 1.698924656
7892504 7.782306778
7892505 2.135266835
7892506 2.04019303
7892507 4.614080206
7892508 2.218332486
7892509 7.677723125
7892510 2.99834615
7892511 4.150970549
7892512 4.275081144
7892513 2.333188504
7892514 7.061518334
7892515 7.96648326
7892516 3.82550214
7892517 5.18232254
7892518 1.220984355
7892519 2.146764494
7892520 7.308203219

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458670_IPF_1030_1.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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