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Sample GSM2458669 Query DataSets for GSM2458669
Status Public on Jan 14, 2017
Title IPF_1030, Timepoint 0
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: male
survival (months): 29
age (years): 68
fvc: 50.9
dlco: 37.3
composite_end_point: 1
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 0
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.359470395
7892502 2.94242285
7892503 1.847933147
7892504 6.8856854
7892505 1.313899943
7892506 2.053644587
7892507 4.655331348
7892508 3.204559794
7892509 8.484107486
7892510 2.120594093
7892511 4.520708839
7892512 4.254849995
7892513 3.324431781
7892514 6.951045065
7892515 7.98416614
7892516 5.182835765
7892517 4.594448924
7892518 1.262062018
7892519 2.20296703
7892520 7.282437802

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458669_IPF_1030_0.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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