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Sample GSM2458668 Query DataSets for GSM2458668
Status Public on Jan 14, 2017
Title IPF_1029, Timepoint 4
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 4
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.460653454
7892502 2.215352907
7892503 2.442086078
7892504 8.026962182
7892505 1.88306572
7892506 1.395549202
7892507 4.134853441
7892508 3.651452379
7892509 7.524363988
7892510 3.349186013
7892511 4.14431152
7892512 3.311149238
7892513 2.325087418
7892514 7.228276856
7892515 8.324303189
7892516 4.922256381
7892517 4.155538854
7892518 1.099213447
7892519 1.450067009
7892520 7.178454353

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458668_IPF_1029_4.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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