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Sample GSM2458667 Query DataSets for GSM2458667
Status Public on Jan 14, 2017
Title IPF_1029, Timepoint 3
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 3
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.670441566
7892502 2.948450476
7892503 2.231831191
7892504 7.166041173
7892505 2.857643359
7892506 2.709407805
7892507 5.028118099
7892508 2.496658969
7892509 6.92297801
7892510 2.727194454
7892511 4.383876906
7892512 3.234498056
7892513 1.918068808
7892514 6.758954792
7892515 8.327899075
7892516 3.334977872
7892517 4.649342949
7892518 1.243141528
7892519 1.551415617
7892520 7.884640376

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458667_IPF_1029_3.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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