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Sample GSM2458666 Query DataSets for GSM2458666
Status Public on Jan 14, 2017
Title IPF_1029, Timepoint 2
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 2
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.483550295
7892502 2.728088657
7892503 2.484085689
7892504 8.054420046
7892505 1.957459587
7892506 1.866422849
7892507 2.768387517
7892508 2.500119896
7892509 6.512363141
7892510 1.444594012
7892511 3.212327247
7892512 3.423237112
7892513 1.988173226
7892514 7.008272305
7892515 7.916210685
7892516 4.050673013
7892517 3.057081442
7892518 1.203474651
7892519 2.052452627
7892520 7.558760156

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458666_IPF_1029_2.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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